From VuzeWiki
are just logical addresses inside your computer's
networking functionality. From technological perspective there is no difference between ports, so you can select any port which is not already used by something else and then you need to configure your firewall and router accordingly.
Vuze needs only one port for the main data transfer functionality. Choose a port from the 4;65534 range. If you really need to choose a port within the range ;49151 make sure you pick an "unassigned" port listed at the
and which is not already in use by some other application in your computer.
and input the new TCP and UDP listening port that you have chosen.
Save the changed options.
Go into your software firewall configuration and make sure that Vuze is allowed outgoing and incoming connections (and if there is such an option, enable Vuze to act as a server). Possibly the firewall is only configured for applications, but it might also require port-specific configuration.
Go into your router configuration, if any, and forward the port you have chosen using the methods as described in
and . Remember to forward that port not only for TCP but also for UDP protocol,
needs that! (If your router is using UPnP, it should update automatically.
Note: When using a port above 49152, you always run to a risk that some other program has randomly grabbed that port before you start Vuze. For example, with Vista and Windows7 the operating system itself usually grabs ports
at boot, so you can't use those ports. For Windows 8.1, the operating system seems to grab ports throughout the entire numerical range.
In Windows environment, you can check which ports are currently in use (already reserved by some program) from CMD commandline prompt with the command NETSTAT -A . Or use the command NETSTAT -A & FILE. This will produce a text file of the results, saved in the directory from which the command prompt is operating. The text file might be much more convenient to use, as without it, the screen results may just scroll by.
Select randomly some port number, which is not shown in the list. The command should output the currently used ports with results like:
C:\Users\myusername&netstat -a
Proto Local Address Foreign Address State
TCP 0.0.0.0:135 P35HN:0 LISTENING
TCP 0.0.0.0:445 P35HN:0 LISTENING
TCP 0.0.0.0:5357 P35HN:0 LISTENING
TCP 0.0.0.0:12110 P35HN:0 LISTENING
TCP 0.0.0.0:49152 P35HN:0 LISTENING
So, lots of free ports to choose from as only a few ports are already taken...
Once again, the NETSTAT -A command shows ports that you can't use. Select randomly a port, which is not shown in the list.
When you first install Vuze, it selects the "main port" for torrent downloading/uploding usage by random. As described previously, you can change that to something else if you like.
Vuze also uses some ports for internal use and/or as defaults for some functionality:
1900 UDP: Used for UPnP?
6880 TCP: Vuze uses this port for internal communication. When you launch Vuze, it always checks that port for an older instance of Vuze being already active. If there is an active Vuze, then the new Vuze instance passes the possible torrent name as parameter to the old instance already running and then dies. (This happens e.g. when you click a "download torrent" link on a web page. A new second Vuze instance gets launched by the browser, but it dies after passing the argument to the old Vuze.) If there was no active old Vuze, then the new Vuze reserves that TCP port and starts "listening" there.
6969 TCP: If you enable internal HTTP tracker, this is the default port used. You need to port-forward this port in router for full connectivity.
7000 TCP: Default port for HTTPS tracker. (usually not in use)
16680 UDP: Used for the 'LAN peer finder' functionality.
45100 TCP: Used for magnet URI handling.
49001 UDP: Used for Mainline DHT (if that plugin is installed). You need to port-forward this port in router for full connectivity.
have been increasingly reducing the available bandwidth for P2P users on the standard file-sharing . You may find you need to keep changing your port on a regular basis. This is normal, and a port change should sort you out if this is indeed what is happening. And please keep in mind that after any port change, and stopping and restarting any torrent, it may take up to half an hour or more for the benefits to become noticeable. So please try not to panic when things do not improve immediately. This is normal. :)
If you suspect that your ISP is blocking/throttling bittorrent traffic, you might check the
and consider ways to
e.g. by encryption.
To avoid a decreasing , some
administrators are banning these often throttled standard . This includes the standard port range of ;6999, which ports were used by the "original" Bittorrent client program a few years ago.
So what happens is, those trackers reject connections from bittorrent clients who are listening on any of the ports within those ranges, and some of those trackers may blacklist those IPs for 48 hours. So the torrents will show , and even if you change your listening port, you are unable to connect because of the 48 hour ban. This kind of ban will often be reported under the "Tracker Status" of a torrent in its , with the blacklisted information.
The same goes for ISPs, who recognize the port 6881 to be used mostly for bittorrent traffic, and it might be the first port to be blocked if the ISP starts to block/throttle/shape bittorrent traffic. If you mostly receive , you might suspect that to be the reason.
The best advice is to never use ports from the range .
Choose a new TCP listening port for Vuze. The best range to choose a new port from is: 4;65534 If you really need to choose a port within the range ;49151 make sure you pick an "unassigned" port listed at the . Remember that Vuze needs one listening port only, so please choose one port from the above range.
and input the new TCP and UDP listening port that you have chosen.
Click "Save" at the bottom left side of the screen.
Go into your router and/or firewall, if any, and forward the port you have chosen using the methods as described in
and . Remember to forward that port not only for TCP but also for UDP protocol,
needs that! (If your router is using UPnP, it should update automatically.) The "Port xxxx is blacklisted" message from the
should disappear and the torrent will start. If not, check your router and firewall, then go on to step 5.
Stop all your actively running torrents. (This is temporary, just until you get the port sorted out. Vuze will remember all the peers you were connected to when you start the torrents up again, even if the tracker is offline. No need to panic. Please ring a friend if you need any extra support during this trying experience.) :-)
Quit Vuze.
Wait a few minutes.
Go to Help -& NAT/Firewall Test and do the port test. You will see a port tester with your selected port entered in it by default. Change the port number, if necessary, and click "test". You will then get any one of three results from this:
"This port can not be tested because it is already in use" If you get this message, repeat steps 4–8
"NAT Error" If you get this message, please see the
"OK!" If you get this message, then you have just done everything right, all is groovy, and the world should appear a much rosier place to live in. :-)Warning: this web site requires JavaScript to function.
Join Legend
Serious alignment problem, requires review.
Zero, or more than one, overlaps
Half dove-tail &50 bp
Alignment identity &98%
Alignment length &50 bp
&2 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Minor alignment problem.
Exactly one overlap
Half dove-tail &0 bp and <=50bp
Alignment identity &99.6%
Alignment length &2000 bp
&0 gaps, each gap &25 bp, not marked as an SSR
&0 gaps, each gap &50 bp, not marked as an SSR
&0 gaps, each gap &500 bp, not marked as an SSR
&0 gaps, each gap &500 bp, marked as an SSR
Excellent alignment, meets all defined criteria.
Exactly one RuleInfo
Half dove-tail &=0 bp
Alignment identity &=99.6%
Alignment length &=2000 bp
&=0 gaps, each gap &25 bp, not marked as an SSR
&=0 gaps, each gap &50 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, not marked as an SSR
&=0 gaps, each gap &500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Curator LinksMust Select a Preferred Alignment to Add Switchpoints.
Alignments for CU and CU
Mismatches = 72, Gaps = 12, Length = 7429
Percent identity = 98.55%
Score = 0 bits (0), Expect = 0
1 BAC and 0 Fosmid bridging clones.
1 BAC and 0 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
aagcttgaactttccagtgcagcgatctgcaaaacttgccacatgatcttgcgtgtccgg 129424
............................................................ 60
tctgatgcattcgtgtacatatgaatgaaagtcagatttactacggagacccatcactct 129484
............................................................ 120
agcattctgtggcactggaacataatgtctccgtactttacaaaaaactgcagattaaat 129544
............................................................ 180
ggggcaacagtaaatgcattacaaacgtgctgtgtgaaaacaaaatggtcagttccttca 129604
............................................................ 240
tccatgttttatatgcactgcgtctggactgtacacacacagcagatggactttgtgaaa 129664
............................................................ 300
aataggcataagaggcattataaagttttagaatacacaaatgaacactggaatctccat 129724
..c.....................................g................... 360
agactgccttcttctgagacagataagttaagtttcacagaggttagtcctgttttgaat 129784
................................c........................... 420
ctgccactatgctgctgatgcataggcatttgtagctcctccctcttttgaaaagtactc 129844
.......................................................c.... 480
atttgaatttaaagtgacagtcaccaaatggtacaatttggatcaaagcctaaatcacac 129904
..........g........................................t........ 540
ctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttcct 129964
............................................................ 600
tgtcgtcatttgtaagtcgctttggataaaagcgtctgctaaatgactaaatgtaaatgt 130024
............................................t............... 660
aaatgtaaatcggcattttaaaagagttgcctttaatactgttgtcttaccccacctttg 130084
....c.------................................................ 714
caggaaaagtaagacaaattcttttaaaatattttactagaatactaatttggagaaaat 130144
............................................................ 774
gtcaaatcttactgcacaatgtatctatgtttttactctgaatagcagtgtgattttgtg 130204
.......................g...................................c 834
tttttttacccttcattaaaatgtagttatgcatgtagtctccagcaggtggcacatgtt 130264
............................................................ 894
gcattcttaagctcacctttccagccacgtgtgctgacgcttctgaatcaggcagaacgc 130324
............................................................ 954
tgtgaatcttgccttcttttattactataacggcaggtagaattttctctccacacaaaa 130384
...a.....................a...............................c.. 1014
ccctctggctccgtacagcactgacagctgatcctggctccatgtctacaatgctgcata 130444
............................................................ 1074
tagtatgtttgagctgcggtgtttcagtctgttctgtcagcaaagactgtaaatatgggg 130504
....c....................................................... 1134
tcaatgtactgtcacattggctatgttactgtcaacatgaagataaagttttttgacctg 130564
............................................................ 1194
acctgatacttaaaaagcaaataagaattcaattaataaaaatgctattttagtcgtttc 130624
............................................................ 1254
ttttcaggattagttatacaagcatttctgtggaaaaagagaacagcccacatgaaaata 130684
..........................a.c............................... 1314
aaactttagcaatgagctcaagtacaatttattatactgtatacactcaacggtcacttt 130744
..t-..................................c.................a... 1373
attaggtacacctgtgaaactgctcgttaaggcaaatttccaatcagccaatcacatggc 130804
...............cc........................................... 1433
agcaacacaatgcatttaagcacggagacatgttcaaggcgatctgcagcagttaaaacc 130864
.......................t.................................... 1493
aaacatcagaatggggaaaaagctgattgaagtgacttgacttcaaacgtggcatagttg 130924
............................................................ 1553
ttggtgccagacgggctggtctgaatatttcagaaactgctgatctactggaattttcac 130984
............................................................ 1613
aaacagccatctctagggtttacagagaatggtccgaaaaagagaaaatatccagtgagc 131044
............................................................ 1673
ggcagttctgtacaaatgtattgttgaggccagaggtcagaggagaatggccagactggt 131104
............................................................ 1733
tcgagctgatagaaaggcaacagcaactgaattaacaactcgttacaacaggtatgcaga 131164
............................................................ 1793
agagcatctctgaacacacaacatgtccaaccttgaggcaaatgggctaaagcagcagaa 131224
............................................................ 1853
gaacccaccgggtgccactcctgtcagctaaaaacaggaaactggggctacaattcgcac 131284
............................................................ 1913
agggacaccaaaatggtagggtcagaatttgacatgaaagcatagatccatcccgcttgg 131344
..a..................................................t...... 1973
tatcaatggttcaggctggtggtggtggtggtggtataatggtgtgagggatattttctt 131404
............................................................ 2033
ggcacactttggtcgcattagtaccaattgagcattgtgtcaatatcacagcctacctgt 131464
..............a............................................. 2093
gcattgttgctgaccatgtccatcccattatgaccacactgtacccatcttctgatggct 131524
.............................t.............................. 2153
acttccggcaggataatgcaccatttcataaagcggcaatcatcttagattggaatcgag 131584
............................................................ 2213
catctttgggatgtggtggaatgggagattcgcatcatggatgtgcagccaacaaatctg 131644
............................................................ 2273
cagcaactgcgtgatgctatcatgtcaatatggaccaaaatctttgaggaatatttccag 131704
............................................................ 2333
taccttgttgaatctatgccacgaaggataaagctagttcggtactagtaaggtgtacct 131764
.................................gc......................... 2393
aataaagtggctggtgagtgtatattatactattttcaacactttgttaatgaatgctac 131824
...................................a........................ 2453
atcatgttgtaatgttaactatagtgaactaataaagtaacaaatgcagcgtatttagtt 131884
............................................................ 2513
gtcttatctttactcacacactttaaacttgtaattcaagtatttaacaatattgaaatg 131944
.....................a...................................... 2573
actgagatattgcagtatacgttttactaccataaactgtggtgcataatataccctaag 132004
........................................-c..-............... 2631
gctatatgtacagtattggggtatttgtttatggttcttgtattaccagaacagattaat 132064
...............a..............t.....g....................... 2691
tcaagtacttgacaataggttcaaagatactatagtgtttacttaaaactaaaaaaagaa 132124
............................................................ 2751
gttacaatttgcaggtggatattgtgtggtagtaggcctacactttttttctcttctgta 132184
.....c............................................t......... 2811
aatattgtggacctctacagttggcagtgttctcttgcatcatcatgttttcattagtgg 132244
............................................................ 2871
tataaattctgcctaaaagctgtccctttatcaggcattaggcccacaccagtgcttctt 132304
............................................................ 2931
tagctggataaattattcaaagcattgctctagtgagccgagacagagcagcaggaagga 132364
............................................................ 2991
gagagagacagaaggagcaaaaaagcaggcacaggggatcactcagactgccattgtatc 132424
............................................................ 3051
tatctgaaggctgtggttgctcagtgcttggccatttccttggataaatcaatggcattt 132484
............................................................ 3111
ttcttttcaatttaaatttaaagtaggagtaatgttgaatggttcagttttacca-tttt 132543
.......................................................t.... 3171
ggagttcattcatccaatttccaggtctagcgggagcacttttagcttagcttagcataa 132603
............................................................ 3231
atcagggatgtccaagcttggtcctggagggcctgtgtcttgctgagttaagctccaact 132663
.g........................................................t. 3291
tgcttcaacacacctgcaaggaagtctctagtatgtctagtaagcttgattagctcgttc 132723
............................................................ 3351
aggtgtgtttgattagggttggagctaaactctctgggacactggccctccaggaccgag 132783
............................................................ 3411
tttggacacccctggcataaatcactgaaccagattagaccataacatctcactgaag-a 132842
..........................................................a. 3471
aaaaaaaaaatcctatttacagcttcactcttctgtagttacatcgtgtactgtttaact 132902
.............c.............................................. 3531
cctagattactttaaaataagcttatataataattgtatatattcattatggtagagtga 132962
............................................................ 3591
acatatgataatataacattgagtcatgttattgtcaacagcccctgtcaaataatggca 133022
............................................................ 3651
ttaaaatgttaaatatttagacattttatatctatcattagccaccagatgtcgccaaaa 133082
............................................................ 3711
ttgcacatttttagggtttggttggcctgaattgaccagtgaaatttttgcaggagtaaa 133142
............................................................ 3771
aaaagtattacttttattcattcattttccatcggcttagtccatatattcattagaggt 133202
..................a......................................... 3831
cgccacagtggaatgatccactaacttatccagcatctattttacacagcgaatgccctt 133262
............................................................ 3891
ccagctgctacccagtactgggaaacacccataaacactcacacacacacacacacacac 133322
t................................c.......tt................. 3951
aatatgggcacgttactttatttaattcacctgtaccgcatgtctttgtactgtggggga 133382
............................................................ 4011
aaccggagcacccggagaaaacccacgcaaacacgggaagaacatgcaaactctacacag 133442
.............................................c.............. 4071
acatgccaactgacccagctaggactcgaaccggcgaccttcatgctgtgaggtgacagt 133502
.a.......................................................... 4131
gctaatcactgcaccaccatgttgctacaaaaatatcacttttactataacatgaaaata 133562
.......c.................................c....g............. 4191
agcatactttacataaacatttaactgaaaaaaattgggcaaaataattttctattctta 133622
.....................c.......................c.............. 4251
aaaaaaggtttcttttatctgagtgctccaagacatgactacttatatttatatatatat 133682
...........................t..g.............---..........c.. 4308
atatatatatatatatatatatatatatatatatatatatatatatatatatatatatat 133742
......g...g...g...g.g.g..........--------------------------- 4341
gtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatgtatatatat 133802
------------------------------------------------------------ -1
atgtatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgt 133862
------------------------------------------------------------ -1
gtgtttttgtgtttttgttgaaacaagaggcaaacagataaatagtagtataaatgtata 133922
------------------------------------------------------------ -1
tgtatatgtatgtgtgtatcgaactggcgaccttcatgctgtgaggtgacagtgctaatc 133982
------------------------------------------------------------ -1
actgcaccaccatgttgctacaaaattatcacttctactgtaacatgaaaataagcatac 134042
------------------------------------------------------------ -1
tttacataaacatttaactgaaaaaaattgggcaaaataattttctattcttaaaaaaag 134102
------------------------------------------------------------ -1
gtttcttttatctgagtgctccaagacatgactacttatatatatatatatatatatata 134162
------------------------------------------------------------ -1
tatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtg 134222
------------------------------------------------------------ -1
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtatatatatata 134282
------------------------------------------------------------ -1
tatatatatatatatgtgtatatatatatgtgtgtatatatatatatatatatatatata 134342
------------------------------------------------------------ -1
tatatatatatatatatatatatatatatatatatacatatatgtatatgtgtgtgtgtg 134402
------------------------------------------------------------ -1
tgtgtgtgtgtttttgttgaaacaagaggcaaacagataaatagtagtataaatgtatat 134462
------------------------------------------------------------ -1
gtatatgtatgtgtgtatatatatgtgtatatatatatatatatatatatatatatatat 134522
------------------------------------------------------------ -1
atatatatatatatatatatatatatatatatatatatatatatatatatatataaaaga 134582
------------------------------------------------------------ -1
agcttctcatacgaaaggatttttaaactcgtgtttgatttttctttttttagacatgaa 134642
------------------------------------------------------------ -1
tatgcagtcgaactgttgtcactggtgggacactaaggcacttggccttggccttggcac 134702
------------------------------------------------------------ -1
ttggccacacacacatgaatttccacaattcatgtgtgtgtgtgtgtgtatgtgtatata 134762
------------------------------------------------------------ -1
tatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 134822
------------------------------------------------------------ -1
ttgaaacaagaggcaaacagataaatagtagtataaatgtgtatgtatatgtatgtatgt 134882
------------------------------------------------------------ -1
gtgtatatatatatatatatatatatataggggtgatagaggtgtctgtgaaccgcaatg 134942
------------------------------------------------------------ -1
cagatgggacaattcataggttcaaaaatagatcataatctgttattacatactgacgtc 135002
------------------------------------------------------------ -1
atttatctcctatgcgcaatgtatagttaagggcgagtaaataaaatgttcctactgctt 135062
------------------------------------------------------------ -1
aaaaggtaaataattatgcacaattcaacttaagtttgctggaaagtctttcgttgacac 135122
------------------------------------------------------------ -1
tgaagaaggtacaggacacgtaccgctatttcactactagggagaaatgctgtaaaaatt 135182
------------------------------------------------------------ -1
attggacattaaacccattggcatgttcgtgaggtaacttttcttctcctcttggctaaa 135242
------------------------------------------------------------ -1
tagattgtacccgcagctgttcttcccaaatcccatatatcgg----------------- 135285
-------------------------------------------cacacacacacacacac 4358
------------------------------------------------------------ -1
acacacacacatacacacacacacacacatatatatatatatatatatatatatatatat 4418
------------------------------------------------------------ -1
atatatatatatatatatatatatatgtgtgtgtgtgtgtgttttgtgtttgttgagtca 4478
------------------------------------------------------------ -1
agtggcaaacagataaatagtagtatatgcatgtatgtgtgtgtgtgtgtgtgtgtgtgt 4538
------------------------------------------------------------ -1
gtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatataggggtgataga 4598
------------------------------------------------------------ -1
ggtgtctttgaaccgcaatgcagatggggactattcataggttcaaaaataaatcataat 4658
------------------------------------------------------------ -1
ctgttattacatactgacatcatttatctcctatgcgcaatgtatagttgagggcaagta 4718
------------------------------------------------------------ -1
aataaaatgttcctactgcttaaaaggtaaataattatgcacaattcaacttgagatgct 4778
------------------------------------------------------------ -1
ggaaagtctttcattgacactgaagaaggtacagcacacgtaccgctatttcactactag 4838
------------------------------------------------------------ -1
ggagaaatgctgtaaaaatccacctctttttggacatttaacccattggcatgttcgtga 4898
------------------------------------------------------------ -1
ggtaacttttcttctcctcttggctaaatagattgtacccgcagctgttcttcccacatc 4958
------------------------------------------------------------ -1
ccgtatatcggcactggtggaaggtgtgcactggcaggagtccacaggccaagtgcctta 5018
---------------cactggtggaaggtgtgcactggcaggagtccacaggccaagtgc 135330
gtgtcccactagtga............................................. 5078
cttagtgtcccacc---------------------------------------------- 135344
......--------atatatatatatatatatatatatatatatatatatatatatatat 5130
------------------------------------------------------------ -1
atatatatatatatatatatatatatatatatatatatataggggtgatagaggtgtctt 5190
------------------------------------------------------------ -1
tgaaccgcaatgcagatggggactattcataggttcaaaaataaatcataatttattatg 5250
-----agtgacgacagttcgactgcatattcatgtctaaaaaaagaaaaatcaaacacga 135399
atact......a.................................g.............. 5310
gtttaaaaatccttttgtatgagaagcttcttttttccacccttcattcacatctgcagc 135459
............................................................ 5370
tgatgtcagaacagcagaaactgttgttacttcacacacgtcactttagagcttgtattt 135519
............................................................ 5430
gagtgattaatgtctaaagtgaagacaaaatggatgattttatgactataaggctgaacg 135579
.....g.........g..............c............................. 5490
acatgaaatgccatcagtctacagcggtttcccagtatttctctgttgcatttaggagat 135639
............t...........ta.................................. 5550
cacaataattatacccaaaaaagccaaagcaatgcaaacactgctgttgtgattactatt 135699
..........................................a................. 5610
gtgtttgcgataaggaaaaacgctaaacacatgcaggcatttcttctttccttcgaattt 135759
.....................................................t...... 5670
gaaaattccagatagacctgtttgaattcagtaatgaaatatgtaaacatgctattggca 135819
.........................................................c.t 5730
tgatacttgatcttatttccagttggatttaca--ttttttttcccattagaaaatgcag 135877
.................................tt......................... 5790
aggctgagtcagaagaatggaggtggattaatgtcagtgggaaaagctt 135926
................................................. 5839
Mismatches = 98, Gaps = 29, Length = 6876
Percent identity = 98.23%
Score = 3423 bits (1853), Expect = 0
1 BAC and 0 Fosmid bridging clones.
1 BAC and 0 Fosmid concordant clones.
0 BAC and 0 Fosmid discordant clones.
aagcttgaactttccagtgcagcgatctgcaaaacttgccacatgatcttgcgtgtccgg 129424
............................................................ 60
tctgatgcattcgtgtacatatgaatgaaagtcagatttactacggagacccatcactct 129484
............................................................ 120
agcattctgtggcactggaacataatgtctccgtactttacaaaaaactgcagattaaat 129544
............................................................ 180
ggggcaacagtaaatgcattacaaacgtgctgtgtgaaaacaaaatggtcagttccttca 129604
............................................................ 240
tccatgttttatatgcactgcgtctggactgtacacacacagcagatggactttgtgaaa 129664
............................................................ 300
aataggcataagaggcattataaagttttagaatacacaaatgaacactggaatctccat 129724
..c.....................................g................... 360
agactgccttcttctgagacagataagttaagtttcacagaggttagtcctgttttgaat 129784
................................c........................... 420
ctgccactatgctgctgatgcataggcatttgtagctcctccctcttttgaaaagtactc 129844
.......................................................c.... 480
atttgaatttaaagtgacagtcaccaaatggtacaatttggatcaaagcctaaatcacac 129904
..........g........................................t........ 540
ctgaaacttgcctacagcacttattcattgttgctcttatagttgtgtaaattgcttcct 129964
............................................................ 600
tgtcgtcatttgtaagtcgctttggataaaagcgtctgctaaatgactaaatgtaaatgt 130024
............................................---.--.-c....... 654
aaatgtaaatcggcattttaaaagagttgcctttaatactgttgtcttaccccacctttg 130084
...........t................................................ 714
caggaaaagtaagacaaattcttttaaaatattttactagaatactaatttggagaaaat 130144
............................................................ 774
gtcaaatcttactgcacaatgtatctatgtttttactctgaatagcagtgtgattttgtg 130204
.......................g...................................c 834
tttttttacccttcattaaaatgtagttatgcatgtagtctccagcaggtggcacatgtt 130264
............................................................ 894
gcattcttaagctcacctttccagccacgtgtgctgacgcttctgaatcaggcagaacgc 130324
............................................................ 954
tgtgaatcttgccttcttttattactataacggcaggtagaattttctctccacacaaaa 130384
...a.....................a...............................c.. 1014
ccctctggctccgtacagcactgacagctgatcctggctccatgtctacaatgctgcata 130444
............................................................ 1074
tagtatgtttgagctgcggtgtttcagtctgttctgtcagcaaagactgtaaatatgggg 130504
....c....................................................... 1134
tcaatgtactgtcacattggctatgttactgtcaacatgaagataaagttttttgacctg 130564
............................................................ 1194
acctgatacttaaaaagcaaataagaattcaattaataaaaatgctattttagtcgtttc 130624
............................................................ 1254
ttttcaggattagttatacaagcatttctgtggaaaaagagaacagcccacatgaaaata 130684
..........................a.c..............................- 1313
aaactttagcaatgagctcaagtacaatttattatactgtatacactcaacggtcacttt 130744
...t..................................c.................a... 1373
attaggtacacctgtgaaactgctcgttaaggcaaatttccaatcagccaatcacatggc 130804
...............cc........................................... 1433
agcaacacaatgcatttaagcacggagacatgttcaaggcgatctgcagcagttaaaacc 130864
.......................t.................................... 1493
aaacatcagaatggggaaaaagctgattgaagtgacttgacttcaaacgtggcatagttg 130924
............................................................ 1553
ttggtgccagacgggctggtctgaatatttcagaaactgctgatctactggaattttcac 130984
............................................................ 1613
aaacagccatctctagggtttacagagaatggtccgaaaaagagaaaatatccagtgagc 131044
............................................................ 1673
ggcagttctgtacaaatgtattgttgaggccagaggtcagaggagaatggccagactggt 131104
............................................................ 1733
tcgagctgatagaaaggcaacagcaactgaattaacaactcgttacaacaggtatgcaga 131164
............................................................ 1793
agagcatctctgaacacacaacatgtccaaccttgaggcaaatgggctaaagcagcagaa 131224
............................................................ 1853
gaacccaccgggtgccactcctgtcagctaaaaacaggaaactggggctacaattcgcac 131284
............................................................ 1913
agggacaccaaaatggtagggtcagaatttgacatgaaagcatagatccatcccgcttgg 131344
..a..................................................t...... 1973
tatcaatggttcaggctggtggtggtggtggtggtataatggtgtgagggatattttctt 131404
............................................................ 2033
ggcacactttggtcgcattagtaccaattgagcattgtgtcaatatcacagcctacctgt 131464
..............a............................................. 2093
gcattgttgctgaccatgtccatcccattatgaccacactgtacccatcttctgatggct 131524
.............................t.............................. 2153
acttccggcaggataatgcaccatttcataaagcggcaatcatcttagattggaatcgag 131584
............................................................ 2213
catctttgggatgtggtggaatgggagattcgcatcatggatgtgcagccaacaaatctg 131644
............................................................ 2273
cagcaactgcgtgatgctatcatgtcaatatggaccaaaatctttgaggaatatttccag 131704
............................................................ 2333
taccttgttgaatctatgccacgaaggataaag-ctagttcggtactagtaaggtgtacc 131763
.................................g.-........................ 2392
taataaagtggctggtgagtgtatattatactattttcaacactttgttaatgaatgcta 131823
....................................a....................... 2452
catcatgttgtaatgttaactatagtgaactaataaagtaacaaatgcagcgtatttagt 131883
............................................................ 2512
tgtcttatctttactcacacactttaaacttgtaattcaagtatttaacaatattgaaat 131943
......................a..................................... 2572
gactgagatattgcagtatacgttttactaccataaactgtggtgcataatataccctaa 132003
.........................................c-..-.............. 2630
ggctatatgtacagtattggggtatttgtttatggttcttgtattaccagaacagattaa 132063
................a..............t.....g...................... 2690
ttcaagtacttgacaataggttcaaagatactatagtgtttacttaaaactaaaaaaaga 132123
............................................................ 2750
agttacaatttgcaggtggatattgtgtggtagtaggcctacactttttttctcttctgt 132183
......c............................................t........ 2810
aaatattgtggacctctacagttggcagtgttctcttgcatcatcatgttttcattagtg 132243
............................................................ 2870
gtataaattctgcctaaaagctgtccctttatcaggcattaggcccacaccagtgcttct 132303
............................................................ 2930
ttagctggataaattattcaaagcattgctctagtgagccgagacagagcagcaggaagg 132363
............................................................ 2990
agagagagacagaaggagcaaaaaagcaggcacaggggatcactcagactgccattgtat 132423
............................................................ 3050
ctatctgaaggctgtggttgctcagtgcttggccatttccttggataaatcaatggcatt 132483
............................................................ 3110
tttcttttcaatttaaatttaaagtaggagtaatgttgaatggttcagttttaccatttt 132543
............................................................ 3170
-ggagttcattcatccaatttccaggtctagcgggagcacttttagcttagcttagcata 132602
t........................................................... 3230
aatcagggatgtccaagcttggtcctggagggcctgtgtcttgctgagttaagctccaac 132662
..g........................................................t 3290
ttgcttcaacacacctgcaaggaagtctctagtatgtctagtaagcttgattagctcgtt 132722
............................................................ 3350
caggtgtgtttgattagggttggagctaaactctctgggacactggccctccaggaccga 132782
............................................................ 3410
gtttggacacccctggcataaatcactgaaccagattagaccataacatctcactgaaga 132842
............................................................ 3470
aaaaaaaaaa-tcctatttacagcttcactcttctgtagttacatcgtgtactgtttaac 132901
..........a...c............................................. 3530
tcctagattactttaaaataagcttatataataattgtatatattcattatggtagagtg 132961
............................................................ 3590
aacatatgataatataacattgagtcatgttattgtcaacagcccctgtcaaataatggc 133021
............................................................ 3650
attaaaatgttaaatatttagacattttatatctatcattagccaccagatgtcgccaaa 133081
............................................................ 3710
attgcacatttttagggtttggttggcctgaattgaccagtgaaatttttgcaggagtaa 133141
............................................................ 3770
aaaaagtattacttttattcattcattttccatcggcttagtccatatattcattagagg 133201
...................a........................................ 3830
tcgccacagtggaatgatccactaacttatccagcatctattttacacagcgaatgccct 133261
............................................................ 3890
tccagctgctacccagtactgggaaacacccataaacactcacacacacacacacacaca 133321
.t................................c.......tt................ 3950
caatatgggcacgttactttatttaattcacctgtaccgcatgtctttgtactgtggggg 133381
............................................................ 4010
aaaccggagcacccggagaaaacccacgcaaacacgggaagaacatgcaaactctacaca 133441
..............................................c............. 4070
gacatgccaactgacccagctaggactcgaaccggcgaccttcatgctgtgaggtgacag 133501
..a......................................................... 4130
tgctaatcactgcaccaccatgttgctacaaaaatatcacttttactataacatgaaaat 133561
........c.................................c....g............ 4190
aagcatactttacataaacatttaactgaaaaaaattgggcaaaataattttctattctt 133621
......................c.......................c............. 4250
aaaaaaaggtttcttttatctgagtgctccaagacatgactacttatatttatatatata 133681
............................t..g.............-.-..-.......c. 4307
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatata 133741
.......g...g...g...g.g.g..........-------------------------- 4341
tgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatgtatatata 133801
------------------------------------------------------------ -1
tatgtatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtg 133861
------------------------------------------------------------ -1
tgtgtttttgtgtttttgttgaaacaagaggcaaacagataaatagtagtataaatgtat 133921
------------------------------------------------------------ -1
atgtatatgtatgtgtgtatcgaactggcgaccttcatgctgtgaggtgacagtgctaat 133981
------------------------------------------------------------ -1
cactgcaccaccatgttgctacaaaattatcacttctactgtaacatgaaaataagcata 134041
------------------------------------------------------------ -1
ctttacataaacatttaactgaaaaaaattgggcaaaataattttctattcttaaaaaaa 134101
------------------------------------------------------------ -1
ggtttcttttatctgagtgctccaagacatgactacttatatatatatatatatatatat 134161
------------------------------------------------------------ -1
at---------------------------------------------atatatatatata 134176
--cacacacacacacacacacacacacacatacacacacacacacac............. 4399
tatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtg 134236
......------------------------------------------------------ 4405
tgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtatatatatatatatatatatatata 134296
------------------------------------------------------------ -1
tgtgtatatatatatgtgtgtatatatatatatatatatatatatatatatatatatata 134356
------------------------------------------------------------ -1
tatatatatatatatatatatacatatatgtatatgtgtgtgtgtgtgtgtgtgtgtttt 134416
------------------------------------------------------------ -1
tgttgaaacaagaggcaaacagataaatagtagtataaatgtatatgtatatgtatgtgt 134476
------------------------------------------------------------ -1
gtatatatatgtgtatatatatatatatatatatatatatatatatatatatatatatat 134536
------------------------------------------------------------ -1
atatatatatatatatatatatatatatatatatatatataaaagaagcttctcatacga 134596
------------------------------------------------------------ -1
aaggatttttaaactcgtgtttgatttttctttttttagacatgaatatgcagtcgaact 134656
------------------------------------------------------------ -1
gttgtcactggtgggacactaaggcacttggccttggccttggcacttggccacacacac 134716
------------------------------------------------------------ -1
atgaatttccacaattcatgtgtgtgtgtgtgtgtatgtgtatatatatatatatatata 134776
----------------------------------------.................... 4425
tatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaaacaagaggc 134836
.............a.a.a.................t.-.....t......gt....t... 4484
aaacagataaatagtagtata---a---atgtgtatgtatatgtatgtatgtgtgt---- 134886
.....................tgc.tgt......g...g.g...g...g.......gtgt 4544
----------atatatatatatatatatatatata--------ggggtgatagaggtgtc 134928
gtgtgtgtgt.........................tatatata................. 4604
tgtgaaccgcaatgcagatggg-acaattcataggttcaaaaatagatcataatctgtta 134987
.t....................g..t...................a.............. 4664
ttacatactgacgtcatttatctcctatgcgcaatgtatagttaagggcgagtaaataaa 135047
............a..............................g.....a.......... 4724
atgttcctactgcttaaaaggtaaataattatgcacaattcaacttaagtttgctggaaa 135107
..............................................g..a.-........ 4783
gtctttcgttgacactgaagaaggtacaggacacgtaccgctatttcactactagggaga 135167
.......a.....................c.............................. 4843
aatgctgtaaaaatt-a--t-t----ggacattaaacccattggcatgttcgtgaggtaa 135219
..............cc.cc.c.tttt.......t.......................... 4903
cttttcttctcctcttggctaaatagattgtacccgcagctgttcttcccaaatcccata 135279
...................................................c.....g.. 4963
tatcggcactggtggaaggtgtgcactggcaggagtccacaggccaagtgccttagtgtc 135339
............................................................ 5023
ccaccagtgac------------------------------------------------- 135350
....t......actggtggaaggtgtgcactggcaggagtccacaggccaagtgccttag 5083
------------------------------------------------------------ -1
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatata 5143
------------------------------------------------------------ -1
tatatatatatatatatatatatatataggggtgatagaggtgtctttgaaccgcaatgc 5203
----------------------------------------------------------ga 135352
agatggggactattcataggttcaaaaataaatcataatttattatgatactagtgaca. 5263
cagttcgactgcatattcatgtctaaaaaaagaaaaatcaaacacgagtttaaaaatcct 135412
................................g........................... 5323
tttgtatgagaagcttcttttttccacccttcattcacatctgcagctgatgtcagaaca 135472
............................................................ 5383
gcagaaactgttgttacttcacacacgtcactttagagcttgtatttgagtgattaatgt 135532
....................................................g....... 5443
ctaaagtgaagacaaaatggatgattttatgactataaggctgaacgacatgaaatgcca 135592
..g..............c.........................................t 5503
tcagtctacagcggtttcccagtatttctctgttgcatttaggagatcacaataattata 135652
...........ta............................................... 5563
cccaaaaaagccaaagcaatgcaaacactgctgttgtgattactattgtgtttgcgataa 135712
.............................a.............................. 5623
ggaaaaacgctaaacacatgcaggcatttcttctttccttcgaatttgaaaattccagat 135772
........................................t................... 5683
agacctgtttgaattcagtaatgaaatatgtaaacatgctattggcatgatacttgatct 135832
............................................c.t............. 5743
tatttccagttggatttacatttttttt--cccattagaaaatgcagaggctgagtcaga 135890
............................tt.............................. 5803
agaatggaggtggattaatgtcagtgggaaaagctt 135926
.................................... 5839
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
Switch Points
A1359265840++chenhcTaxid 7955 chrom 6 Primary assembly 10:13:43.3938026882852
A1359265840++chenhcTaxid 7955 chrom 6 Primary assembly 16:51:48.4569148194798
IdTypeDateWhodidComment
202490InitHasAlign04/07/:08bouknfind_overlap 1.33 built Aug
5 2009. Toolkit wrapper
using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
Running blast for
Filtering on 0.97%, slop 1000bp, min length 50bp and strands Unknown, Unknown
Found no acceptable dovetail alignments by blast
-W 28 -r 1 -q -3 -G 5 -E 2 -e 1e-05 -Z 200 -F F
Trying banded global alignment with bandwidth = 10001
Fraction identity: 0.986172
Trying banded global alignment with bandwidth = 71043
Fraction identity: 0.986172
No acceptable alignments from banded alignment algorithm
Found 4 acceptable half-dovetail or contained alignment(s) by blast
Using a cleaned up alignment.
tpf_solo for chr6
213508CreateSwitchPt07/09/:43chenhctpf_m_Builder 1.43 Toolkit wrapper version: built Jun
7 2010 using /netopt/ncbi_tools64/c++.by-date//GCC401-Release64/lib
234725ReRunFndOvlp11/04/:22cgi_chenfind_overlap 1.35
15:00:43 boukn Exp $ built Nov
4 2011. Toolkit wrapper
using @c_ncbi_runpath@
Info: Blast Including ID:
Info: Running Blast Filter: 0
Info: Determined ID: gi| needs Merging.
Info: Blast Including ID:
Info: Running Blast Filter: 0
Info: Determined ID: gi| needs Merging.
Info: Blast Including ID:
Info: Running Blast Filter: 0
Info: Determined ID: gi| needs Merging.
Info: Best Rank: 8 in
NG returned 3 alignments
Edge-dup filtered down to 1 alignments
236047CreateSwitchPt11/17/:48chenhctpf_m_Builder 1.51 Toolkit wrapper version: built Nov 17 2011 using @c_ncbi_runpath@
Accession%idPosition (strand) Accession%idPosition (strand)
CH211-101H16CU100%pos 60927 (R+) &CH211-103N21&CU100%pos 37312 (F+) &CU100%pos 37312 (F+) CH211-105I17CU98.94%pos 91353 (R-) &CH211-108G5CU100%pos 42348 (R+) &CH211-117L3CU99.86%pos 60927 (R+) &CH211-120I22CU99.58%pos 60921 (R+) &CH211-127H18&CU100%pos 37306 (F+) CH211-141K2CU100%pos 66445 (R+) &CH211-142A14CU98.97%pos 56937 (R-) &CH211-150J6&CU99.72%pos 5735 (F-) CH211-153C6CU99.74%pos 16523 (R+) &CH211-156G22CU100%pos 98063 (R+) &CH211-160B2&CU97.86%pos 113383 (F-) CH211-169J3CU100%pos 42360 (R+) &CH211-183E7&CU100%pos 105727 (F+) CH211-206E20CU98.72%pos 12531 (R-) &CH211-207F5CU99.57%pos 37377 (R+) &CH211-211J15CU98.74%pos 91831 (R+) CU99.01%pos 107263 (F-) CH211-232C16CU98.92%pos 41870 (R-) CU99.53%pos 2019 (F+) CH211-239D20&CU100%pos 37306 (F+) CH211-244A16CU100%pos 66445 (R+) &CH211-258B9CU100%pos 37325 (R+) &CH211-259N20CU100%pos 66499 (R+) &CH211-263N7CU99.76%pos 41315 (R-) &CH211-269G2&CU99.62%pos 41352 (F-) CH211-270A19CU100%pos 56491 (R-) &CH211-277L16&CU99.86%pos 1234 (F+) CH211-36K7&CU100%pos 5759 (F-) CH211-55N13CU99.86%pos 113775 (R+) &CH211-66M16&CU98.93%pos 91353 (F-) &CU98.94%pos 91353 (F-) CH211-68N5&CU98.54%pos 12563 (F-) CH211-74C17&CU100%pos 66438 (F+) CH211-78J3CU97.7%pos 113527 (R-) &CH211-80P5&CU99.85%pos 1995 (F+) CH211-95A12&CU99.68%pos 66438 (F+) &CU100%pos 66438 (F+) CH73-122C14&CU100%pos 94715 (F-) CH73-126E17CU100%pos 41207 (R-) &CH73-150D4CU100%pos 41207 (R-) &CH73-159K5CU97.18%pos 51753 (R+) &CH73-165F15&CU99.87%pos 56272 (F-) CH73-217L18&CU100%pos 56594 (F-) CH73-220L8&CU100%pos 94759 (F-) CH73-226M12&CU100%pos 41207 (F-) CH73-229E4&CU100%pos 41219 (F-) CH73-23K9&CU100%pos 90983 (F-) CH73-241K6CU100%pos 13306 (R+) CU100%pos 91140 (F-) CH73-242H13&CU98.54%pos 42425 (F+) CH73-242P4&CU100%pos 41296 (F-) CH73-254M20CU100%pos 83917 (R-) &CH73-255A17CU99.61%pos 47283 (R-) &CH73-262H1&CU100%pos 41207 (F-) CH73-267P20CU98.54%pos 42419 (R+) &CH73-276P13CU100%pos 41207 (R-) &CH73-301D17CU98.94%pos 53781 (R+) &CH73-333B6&CU100%pos 41207 (F-) CH73-44O20&CU97.07%pos 51761 (F+) CH73-47C4&CU100%pos 1154 (F-) CH73-66K5CU100%pos 64411 (R-) &CH73-79F3&CU99.73%pos 47324 (F-) CH73-99C15CU100%pos 5601 (R-) &DKEY-101D19CU98.56%pos 97803 (R-) &DKEY-107H14CU97.7%pos 5341 (R-) &DKEY-120C15CU100%pos 24680 (R+) &DKEY-180N1CU99.38%pos 29042 (R-) &DKEY-182C14&CU97.02%pos 113026 (F-) DKEY-182F7CU99.46%pos 85691 (R+) &DKEY-210L8&CU99.18%pos 41798 (F-) DKEY-230K6&CU100%pos 64137 (F+) DKEY-231D12&CU100%pos 49572 (F+) DKEY-232J11&CU99.01%pos 25276 (F-) DKEY-244L20CU100%pos 116955 (R-) CU100%pos 71 (F+) DKEY-245C6CU100%pos 35287 (R-) &DKEY-248K9&CU98.23%pos 83233 (F-) DKEY-256F1CU98.26%pos 17338 (R-) &DKEY-256N20CU100%pos 45428 (R+) &DKEY-282C17&CU100%pos 2015 (F-) DKEY-45H8&CU98.36%pos 74267 (F-) DKEY-45I8&CU98.71%pos 74240 (F-) DKEY-47C7&CU100%pos 107977 (F-) DKEY-52I20CU99%pos 86556 (R-) &DKEY-57H14CU99.21%pos 41782 (R-) &DKEY-75A18CU98.98%pos 74425 (R-) &DKEY-76O5&CU99.72%pos 84250 (F-) DKEY-99P13CU100%pos 36743 (R-) &DKEYP-117D2&CU100%pos 63988 (F-) DKEYP-12O24CU99.73%pos 64267 (R+) &DKEYP-16F12&CU99.61%pos 62163 (F-) DKEYP-16N22CU100%pos 111441 (R-) &DKEYP-17A20CU100%pos 53821 (R+) &DKEYP-21F22CU98.57%pos 29002 (R-) &DKEYP-22F1&CU97.31%pos 111764 (F-) DKEYP-32B24CU98.46%pos 46501 (R-) &DKEYP-32O19CU98.44%pos 105463 (R-) &DKEYP-68G3CU100%pos 42000 (R-) &DKEYP-74H10&CU98.7%pos 73948 (F+) &CU100%pos 73948 (F+) DKEYP-91A3&CU99.46%pos 120635 (F+) RP71-83G11&CU97.51%pos 51685 (F+)
Fosmid Ends
Accession%idPosition (strand) Accession%idPosition (strand)
CHCU100%pos 85150 (R-) CU100%pos 50442 (F+) CHCU99.74%pos 28009 (R+) CU100%pos 59642 (F-) CHCU100%pos 27741 (R+) CU100%pos 59602 (F-) CHCU97.68%pos 48245 (R+) &CHCU100%pos 18825 (R-) &CHCU100%pos 97886 (R-) CU99.87%pos 56106 (F+) CHCU100%pos 44776 (R-) CU100%pos 11611 (F+) CHCU100%pos 41420 (R-) CU100%pos 2866 (F+) CHCU100%pos 51014 (R-) CU100%pos 50872 (F-) CHCU100%pos 59571 (R-) CU100%pos 22627 (F+) CHCU100%pos 68632 (R+) CU100%pos 107614 (F-) CHCU97.01%pos 45072 (R+) &CHCU100%pos 77240 (R-) CU100%pos 42344 (F+) CHCU100%pos 58582 (R-) CU100%pos 28960 (F+) CH&CU99.45%pos 28198 (F-) CHCU100%pos 55388 (R+) CU100%pos 91567 (F-) CHCU99.81%pos 5814 (R+) &CH&CU99.21%pos 53693 (F+) CHCU99.61%pos 23798 (R+) CU100%pos 59029 (F-) CHCU100%pos 15836 (R-) &CH&CU100%pos 17812 (F-) CHCU100%pos 130661 (R-) CU100%pos 99947 (F+) CHCU99.86%pos 66090 (R+) &CH&CU100%pos 119879 (F+) CHCU100%pos 22459 (R-) &CHCU100%pos 120128 (R+) &CHCU99.84%pos 66090 (R+) CU100%pos 105271 (F-) CH&CU100%pos 30954 (F-) CHCU100%pos 77280 (R+) CU100%pos 110185 (F-) CHCU97.5%pos 55131 (R+) &CH&CU98.84%pos 55908 (F-) CH&CU100%pos 14508 (F+) CH&CU98.34%pos 30753 (F-) &CU98.36%pos 30742 (F-) CH&CU100%pos 15914 (F+) CHCU100%pos 68950 (R-) CU100%pos 38782 (F+) CHCU100%pos 58079 (R+) CU100%pos 99108 (F-) CH&CU100%pos 98527 (F-) CHCU100%pos 16231 (R-) &ZFOS-1019C2CU99.88%pos 92200 (R+) &ZFOS-1102E3&CU100%pos 81361 (F-) ZFOS-1263F10CU98.51%pos 16164 (R-) &ZFOS-1268E11CU100%pos 41342 (R+) CU99.88%pos 75391 (F-) ZFOS-1315G1CU98.65%pos 31172 (R+) CU99.86%pos 71351 (F-) ZFOS-1332B12CU97.74%pos 4081 (R+) &ZFOS-1332C6CU97.58%pos 19634 (R-) &ZFOS-1407B7CU98.58%pos 34735 (R-) &ZFOS-1411B1CU99.26%pos 40811 (R-) &ZFOS-1947C8&CU98.33%pos 34344 (F-) ZFOS-1975F4CU98.73%pos 73923 (R-) &ZFOS-2059G12&CU100%pos 79097 (F-) ZFOS-2070B8CU98.15%pos 14606 (R+) CU97.18%pos 68022 (F-) ZFOS-2204F4CU100%pos 34373 (R-) &ZFOS-2229D9CU100%pos 81856 (R+) &ZFOS-2635A10&CU99.14%pos 89841 (F-) ZFOS-2753F10CU97.42%pos 33730 (R-) &ZFOS-2793D2CU97.47%pos 54108 (R+) CU98.15%pos 94995 (F-) ZFOS-2794B11CU100%pos 45765 (R-) CU99.46%pos 316 (F+) ZFOS-470E10&CU100%pos 75447 (F-) ZFOS-732D1CU100%pos 34922 (R+) CU100%pos 80510 (F-) ZFOS-826F3CU98.84%pos 12735 (R-) &ZFOS-832C1CU97.67%pos 112327 (R-) CU99.07%pos 69570 (F+) ZFOS-897F5&CU98.85%pos 12884 (F-) ZFOS-913E12&CU98.08%pos 18648 (F-)
TcMar-Stowaway?
DNA9NNN1_DR
DNA9NNN1_DR
DNA9NNN1_DR
DNA9NNN1_DR
DNA25TWA1_DR
DNA25TWA2_DR
DNA-2-4_DR
hAT-Charlie
hAT-Charlie
hAT-Charlie
hAT-2n1_DR
hAT-Charlie
Harbinger-N10_DR
PIF-Harbinger
Harbinger-N10_DR
PIF-Harbinger
HarbingerN3_DR
PIF-Harbinger
HarbingerN6_DR
PIF-Harbinger
HarbingerN6_DR
PIF-Harbinger
HarbingerN6_DR
PIF-Harbinger
HarbingerN6_DR
PIF-Harbinger
LOOPERN3_DR
LOOPERN4_DR
LOOPERN4_DR
LOOPERN4_DR
LOOPERN4_DR
LOOPERN5_DR
LOOPERN5_DR
DNA11TA1_DR
DNA11TA1_DR
DNA11TA1_DR
CMC-EnSpm?
CMC-EnSpm?
CMC-EnSpm?
hAT-Charlie
hAT-Charlie
hAT-Charlie
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
LSU-rRNA_Hsa
Polinton-1N1_DR
Polinton-2N1_DR
Kolobok-1_DR
Kolobok-T2
Gypsy35-LTR_DR
Gypsy35-LTR_DR
Gypsy35-LTR_DR
Helitron-1_DR
EnSpm-5_DR
EnSpm-3_DR
Helitron-N2_DR
Helitron-N2_DR
ENSPM-6_DR
ENSPM-6_DR
DNA-X-4_DR
DNA-X-4_DR
DNA-X-4_DR
DNA-5-3_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
DNA-6-N2_DR
Helitron-N3_DR
Mariner-N2_DR
Mariner-N2_DR
DNA-5-2_DR
hAT-Tip100
DNA-5-2_DR
hAT-Tip100
DNA-5-2_DR
hAT-Tip100
DNA-5-2_DR
hAT-Tip100
DNA-2-9_DR
DNA-2-9_DR
hAT-N53_DR
hAT-N53_DR
DNA-3-4_DR
PIF-Harbinger
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
DNA-1-2_DR
DNA-2-6_DR
DNA-2-6_DR
Harbinger-N13_DR
PIF-Harbinger
hAT-N57_DR
hAT-N25_DR
hAT-N25_DR
hAT-N25_DR
EnSpm-N2_DR
EnSpm-N1_DR
Kolobok-N4_DR
Kolobok-T2
Kolobok-N4_DR
Kolobok-T2
EnSpm-N4_DR
CMC-EnSpm?
EnSpm-N4_DR
CMC-EnSpm?
hAT-N48_DR
DNA-X-6_DR
DNA-X-6_DR
DNA-X-6_DR
hAT-N29_DR
hAT-N29_DR
Mariner-N7_DR
hAT-N34_DR
Kolobok-N3_DR
Kolobok-T2?
Kolobok-N3_DR
Kolobok-T2?
Kolobok-N3_DR
Kolobok-T2?
Kolobok-N3_DR
Kolobok-T2?
Mariner-N3_DR
CMC-EnSpm?
hAT-N24_DR
DNA-1-1_DR
PIF-Harbinger?
DNA-X-8_DR
DNA-X-8_DR
DNA-2-12_DR
DNA-2-12_DR
DNA-2-12_DR
DNA-8-9_DR
DNA-8-9_DR
DNA-8-9_DR
DNA-8-14_DR
hAT-Charlie
DNA-8-14_DR
hAT-Charlie
DNA-8-14_DR
hAT-Charlie
DNA-8-14_DR
hAT-Charlie
DNA-2-18_DR
DNA-TA-4_DR
DNA-TA-4_DR
DNA-2-24_DR
DNA-2-24_DR
DNA-2-24_DR
DNA-8-24_DR
DNA-8-24_DR
DNA-8-22_DR
DNA-8-29_DR
DNA-8-26_DR
hAT-Tip100?
DNA-8-26_DR
hAT-Tip100?
DNA-1-10_DR
DNA-1-10_DR
DNA-2-24B_DR
Kolobok-1N2_DR
Kolobok-T2
DNA-2-32_DR
DNA-2-30_DR
DNA-2-30_DR
DNA-2-30_DR
DNA-2-30_DR
DNA-2-30_DR
DNA-2-30_DR
DNA-2-30_DR
Kolobok-1N1_DR
Kolobok-T2
hAT-N58B_DR
hAT-N76_DR
DNA-8-34_DR
hAT-Tip100
LOOPERN7_DR
Kolobok-T2
Kolobok-N7_DR
Kolobok-T2
DNA-X-12_DR
DNA-2-33_DR
DNA-2-33_DR
DNA-2-33_DR
DNA-2-29_DR
DNA-1-11_DR
DNA-1-11_DR
hAT5-N1_DR
Helitron-2_DR
Helitron-2_DR
Helitron-2_DR
Helitron-2_DR
Helitron-2_DR
Helitron-2_DR
Helitron-2_DR
DNA9NNN1_DR
DNA25TWA2_DR
DNA25TWA2_DR
DNA-2-4_DR
DNA-2-4_DR
hAT-Charlie
hAT-Charlie
hAT-2n1_DR
hAT-Charlie
Harbinger-N9_DR
PIF-Harbinger
Harbinger-N9_DR
PIF-Harbinger
Harbinger-N10_DR
PIF-Harbinger
HarbingerN5_DR
PIF-Harbinger
HarbingerN5_DR
PIF-Harbinger
HarbingerN6_DR
PIF-Harbinger
DNA11TA1_DR
DNA11TA1_DR
DNA11TA1_DR
DNA11TA1_DR
DNA11TA1_DR
DNA21TA1_DR
hAT-Charlie
hAT-Charlie
hAT-Charlie
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Low_complexity
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
Simple_repeat
IS4EU-1_DR
PIF-ISL2EU
Gypsy38-LTR_DR
hAT-N21_DR
hAT-Charlie
hAT-N21_DR
hAT-Charlie
DNA-3-6_DR
Satellite?
DNA-1-3_DR
DNA-X-2B_DR
DNA-X-4_DR
DNA-X-4_DR
DNA-X-4_DR
DNA-X-4_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
EnSpm-6N1_DR
DNA-X-2_DR
DNA-6-N2_DR
DNA-6-N2_DR
DIRS-4N2-LTR_DR
Mariner-N2_DR
hAT-N38_DR
hAT-Blackjack
hAT-N38_DR
hAT-Blackjack
DNA-2-9_DR
DNA-2-9_DR
hAT-N53_DR
hAT-N53_DR
DNA-TA-2_DR
DNA-6-N1_DR
DNA-6-N1_DR
EnSpm-N6_DR
CMC-EnSpm?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
Kolobok-N1_DR
Kolobok-T2?
DNA-1-6_DR
DNA-1-6_DR
SINE2-1_DR
SINE2-1_DR
hAT-N25_DR
hAT-N25_DR
hAT-N25_DR
hAT-N32_DR
hAT-Charlie
hAT-N32_DR
hAT-Charlie
hAT-N32_DR
hAT-Charlie
DNA-2-7_DR
DNA-2-7_DR
EnSpm-N4_DR
CMC-EnSpm?
hAT-N48_DR
hAT-N48_DR
DNA-3-3_DR
hAT-N49_DR
Mariner-N7_DR
hAT-N34_DR
DNA-1-3B_DR
DNA-1-3B_DR
Mariner-N5_DR
hAT-N24_DR
hAT-N52_DR
hAT-N52_DR
BHIKHARI-5-LTR_DR
BHIKHARI-5-LTR_DR
DNA-2-12_DR
DNA-2-20_DR
DNA-8-9_DR
DNA-8-14_DR
hAT-Charlie
DNA-8-14_DR
hAT-Charlie
DNA-X-7_DR
DNA-8-13_DR
DNA-6-N5_DR
DNA-6-N5_DR
DNA-TA-4_DR
DNA-2-24_DR
DNA-2-24_DR
DNA-8-23_DR
DNA-8-23_DR
Kolobok-1N2_DR
Kolobok-T2
DNA-2-30_DR
Kolobok-N7_DR
Kolobok-T2
Kolobok-N7_DR
Kolobok-T2
DNA-X-12_DR
DNA-5-8_DR
Helitron-2_DR
Helitron-2_DR
BHIKHARI-5-I_DR-int
ERV1-N1-I_DR-int